Research Progress on the Application of Transcriptomics Inmicroplastic Toxicology of Marine Organisms
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摘要: 【目的】综述转录组学技术的发展历程、转录组学在海洋生物毒理学中的研究进展及存在问题,为转录组学在微塑料胁迫下海洋生物分子层面上的毒理效应和机理机制研究领域更为广泛与高效的应用提供参考。【方法】在阐述转录组学发展历程及其在海洋生物毒理学应用的基础上,综述转录组学在鱼类、贝类、藻类和甲壳类毒理学上的研究进展;概括微塑料胁迫下海洋生物体内基因与蛋白质转录本的变化,并对转录组学在海洋生物毒理学的应用前景进行展望。【结果】利用转录组学技术阐明海洋生物体内微塑料毒性作用机制,研究发现微塑料会对海洋生物的免疫功能、代谢功能和生长发育方面的基因和蛋白表达都造成显著影响。但是在后续研究中仍需丰富海洋生物基因信息组信息,加强低浓度微塑料胁迫下海洋生物全周期毒理学研究与微塑料联合毒性研究。【结论】转录组学主要是从分子水平上研究基因表达情况,已是目前海洋生物毒理学研究领域的重要工具。Abstract: 【Objective】 To comprehensively examine the evolutionary trajectory of transcriptomics technology, the advancement, as well as the extant challenges pertaining to its application in marine biotoxicology. This exploration endeavors to foster a more expansive and efficacious utilization of transcriptomics within the sphere of investigating the molecular-level toxicological impacts and mechanisms imposed by microplastic-induced stress upon marine organisms. 【Method】 Drawing upon the evolutionary progression and practical implementation of transcriptomics technology within marine biotoxicology, this paper provided an overall review of the progress made in transcriptomic research encompassing fish, shellfish, algae, and crustacean toxicology. It systematically encapsulated the variations exhibited in gene and protein transcripts within marine organisms when subjected to microplastic-induced stress, suggested a potential avenues for integrating transcriptomics within marine biotoxicological studies. 【Result】 Transcriptomics, as a technological modality, has been instrumental in unraveling the intricate mechanisms underpinning microplastic-induced toxicity within marine organisms. Substantive findings underscore the discernible impacts of microplastics on the immunological, metabolic, genetic, and proteinaceous dimensions governing the growth and developmental trajectories of marine organisms. Yet, the trajectory ahead necessitates a more comprehensive cataloging of marine biological gene datasets, alongside an amplified focus on holistic life-cycle toxicology investigations and the collaborative toxicity effects arising from low-concentration microplastic stressors. 【Conlusion】 In sum, transcriptomics serves as a vanguard investigative approach targeting gene expression at the molecular stratum, thus warranting its pivotal standing within the realm of marine biotoxicology. This cutting-edge tool has not only illuminated the intricate mechanisms governing microplastic-induced toxicity in marine organisms but has also set a promising course for the expansion of knowledge in this vital field.
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Key words:
- transcriptomics /
- microplastics /
- marine environment /
- ecotoxicology
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THOMPSON R C, OLSEN Y, MITCHELL R P, et al. Lost at sea:where is all the plastic?[J]. Science, 2004, 304(5672):838.
CROSTA A, FELICE B D, ANTONIOLI D, et al. Microplastic contamination of supraglacial debris differs among glaciers with different anthropic pressures[J]. The Science of the Total Environment, 2022, 851(Pt 2):158301.
CHENILLAT F, HUCK T, MAES C, et al. Fate of floating plastic debris released along the coasts in a global ocean model[J]. Marine Pollution Bulletin, 2021, 165:112116.
WAYMAN C, NIEMANN H. The fate of plastic in the ocean environment-a minireview[J]. Environmental Science:Processes&Impacts, 2021, 23(2):198-212.
WONG G, LÖWEMARK L, KUNZ A. Microplastic pollution of the Tamsui River and its tributaries in northern Taiwan:spatial heterogeneity and correlation with precipitation[J].Environmental Pollution, 2020, 260:113935.
LI X W, CHEN Y Q, ZHANG S J, et al. From marine to freshwater environment:a review of the ecotoxicological effects of microplastics[J]. Ecotoxicology and Environmental Safety, 2023, 251:114564.
MORGANA S, GAMBARDELLA C, COSTA E, et al.Ecotoxicological effects of microplastics in marine zooplankton[C]//International Conference on Microplastic Pollution in the Mediterranean Sea. Cham:Springer, 2020:234-239.
SARIT O, MESTRE NÉLIA C, SERENA A, et al. Ecotoxicological effects of chemical contaminants adsorbed to microplastics in the clam Scrobicularia plana[J]. Frontiers in Marine Science, 2018, 5:143.
BAI Z A, ZHANG Y, CHENG L M, et al. Nanoplastics pose a greater effect than microplastics in enhancing mercury toxicity to marine copepods[J]. Chemosphere, 2023, 325:138371.
CHOI J S, JUNG Y J, HONG N H, et al. Toxicological effects of irregularly shaped and spherical microplastics in a marine teleost, the sheepshead minnow(Cyprinodon variegatus)[J]. Marine Pollution Bulletin, 2018, 129(1):231-240.
PITTURA L, AVIO C G, GIULIANI M E, et al.Microplastics as vehicles of environmental PAHs to marine organisms:combined chemical and physical hazards to the Mediterranean mussels, Mytilus galloprovincialis[J].Frontiers in Marine Science, 2018, 5:103.
DONG H, CHEN Y L, WANG J, et al. Interactions of microplastics and antibiotic resistance genes and their effects on the aquaculture environments[J]. Journal of Hazardous Materials, 2021, 403:123961.
RACHINGER N, FISCHER S, BÖHME I, et al. Loss of gene information:discrepancies between RNA sequencing,cDNA microarray, and qRT-PCR[J]. International Journal of Molecular Sciences, 2021, 22(17):9349.
VAN DER KLOET F M, BUURMANS J, JONKER M J,et al. Increased comparability between RNA-Seq and microarray data by utilization of gene sets[J]. PLoS Computational Biology, 2020, 16(9):e1008295.
LOPEZ M F, PLUSKAL M G. Protein micro-and macroarrays:digitizing the proteome[J]. Journal of Chromatography B, 2003, 787(1):19-27.
NEGI A, SHUKLA A, JAISWAR A, et al. Chapter 6-Applications and challenges of microarray and RNAsequencing. Applications and challenges of microarray and RNA-sequencing[M]//SINGH D B, PATHAK R K.Bioinformatics:Academic Press, 2022:91-103.
VISHNURAJ M R, ARAVIND KUMAR N, VAITHIYANATHAN S, et al. Authentication issues in foods of animal origin and advanced molecular techniques for identification and vulnerability assessment[J]. Trends in Food Science&Technology, 2023, 138:164-177.
S A N G E R F, N I C K L E N S, C O U L S O N A R. D N A sequencing with chain-terminating inhibitors[J]. Proceedings of the National Academy of Sciences of the United States of America, 1977, 74(12):5463-5467.
ALI KHAN I. Do second generation sequencing techniques identify documented genetic markers for neonatal diabetes mellitus?[J]. Heliyon, 2021, 7(9):e07903.
RHOADS A, AU K F. PacBio sequencing and its applications[J]. Genomics, Proteomics&Bioinformatics,2015, 13(5):278-289.
ROVIGATTI U. Cancer modelling in the NGS era-Part I:Emerging technology and initial modelling[J]. Critical Reviews in Oncology/Hematology, 2015, 96(2):274-307.
ARI&, ARIKAN M. Next-generation sequencing:advantages, disadvantages, and future[M]//HAKEEM K,TOMBULOĞLU H, TOMBULOĞLU G. Plant Omics:Trends and Applications. Cham:Springer, 2016:109-135.
ROUNDTREE I A, EVANS M E, PAN T, et al. Dynamic RNA modifications in gene expression regulation[J]. Cell,2017, 169(7):1187-1200.
PEDERSEN A F, GOPALAKRISHNAN K, BOEGEHOLD A G, et al. Microplastic ingestion by quagga mussels,Dreissena bugensis, and its effects on physiological processes[J]. Environmental Pollution, 2020, 260:113964.
HUSOY A M, MYERS M S, WILLIS M L, et al. Immunohistochemical localization of CYP1A-like and CYP3A-like isozymes in hepatic and extrahepatic tissues of Atlantic cod(Gadus morhua L), a marine fish[J]. Toxicology and Applied Pharmacology, 1994, 129(2):294-308.
MAK C W, CHING-FONG YEUNG K, CHAN K M.Acute toxic effects of polyethylene microplastic on adult zebrafish[J]. Ecotoxicology and Environmental Safety,2019, 182:109442.
GARDON T, MORVAN L, HUVET A, et al. Microplastics induce dose-specific transcriptomic disruptions in energy metabolism and immunity of the pearl oyster Pinctada margaritifera[J]. Environmental Pollution, 2020, 266:115180.
LI Z Q, CHANG X Q, HU M H, et al. Is microplastic an oxidative stressor? evidence from a meta-analysis on bivalves[J]. Journal of Hazardous Materials, 2022, 423:127211.
RAINIERI S, CONLLEDO N, LARSEN B K, et al.Combined effects of microplastics and chemical contaminants on the organ toxicity of zebrafish(Danio rerio)[J].Environmental Research, 2018, 162:135-143.
WAN Z Q, WANG C Y, ZHOU J J, et al. Effects of polystyrene microplastics on the composition of the microbiome and metabolism in larval zebrafish[J]. Chemosphere, 2019,217:646-658.
CHEN Q, LV W W, JIAO Y, et al. Effects of exposure to waterborne polystyrene microspheres on lipid metabolism in the hepatopancreas of juvenile redclaw crayfish, Cherax quadricarinatus[J]. Aquatic Toxicology, 2020, 224:105497.
LIMONTA G, MANCIA A, BENKHALQUI A, et al.Microplastics induce transcriptional changes, immune response and behavioral alterations in adult zebrafish[J].Scientific Reports, 2019, 9:15775.
LIU Y, JIA X W, ZHU H, et al. The effects of exposure to microplastics on grass carp(Ctenopharyngodon idella) at the physiological, biochemical, and transcriptomic levels[J]. Chemosphere, 2022, 286:131831.
CHEN X, PENG L B, WANG D, et al. Combined effects of polystyrene microplastics and cadmium on oxidative stress, apoptosis, and GH/IGF axis in zebrafish early life stages[J]. Science of the Total Environment, 2022, 813:152514.
RAVAGNAN L, GURBUXANI S, SUSIN S A, et al. Heatshock protein 70 antagonizes apoptosis-inducing factor[J].Nature Cell Biology, 2001, 3(9):839-843.
ZHANG B H, TANG X X, LIU Q, et al. Different effecting mechanisms of two sized polystyrene microplastics on microalgal oxidative stress and photosynthetic responses[J].Ecotoxicology and Environmental Safety, 2022, 244:114072.
YU Z Y, YAN C Z, QIU D H, et al. Accumulation and ecotoxicological effects induced by combined exposure of different sized polyethylene microplastics and oxytetracycline in zebrafish[J]. Environmental Pollution, 2023, 319:120977.
ABARGHOUEI S, HEDAYATI A, RAEISI M, et al. Sizedependent effects of microplastic on uptake, immune system,related gene expression and histopathology of goldfish(Carassius auratus)[J]. Chemosphere, 2021, 276:129977.
CHEN J C, CHEN M Y, FANG C, et al. Microplastics negatively impact embryogenesis and modulate the immune response of the marine medaka Oryzias melastigma[J].Marine Pollution Bulletin, 2020, 158:111349.
YE G Z, ZHANG X, LIU X Y, et al. Polystyrene microplastics induce metabolic disturbances in marine medaka(Oryzias melastigmas) liver[J]. Science of the Total Environment, 2021, 782:146885.
YANG W J, JANNATUN N, ZENG Y Q, et al. Impacts of microplastics on immunity[J]. Frontiers in Toxicology,2022, 4:956885.
SHARIFINIA M, BAHMANBEIGLOO Z A, KESHAVARZIFARD M, et al. Microplastic pollution as a grand challenge in marine research:a closer look at their adverse impacts on the immune and reproductive systems[J].Ecotoxicology and Environmental Safety, 2020, 204:111109.
CUNHA C, LOPES J, PAULO J, et al. The effect of microplastics pollution in microalgal biomass production:a biochemical study[J]. Water Research, 2020, 186:116370.
HAN Y, SHI W, TANG Y, et al. Microplastics and bisphenol A hamper gonadal development of whiteleg shrimp(Litopenaeus vannamei) by interfering with metabolism and disrupting hormone regulation[J]. Science of the Total Environment, 2022, 810:152354.
LAGARDE F, OLIVIER O, ZANELLA M, et al. Microplastic interactions with freshwater microalgae:Heteroaggregation and changes in plastic density appear strongly dependent on polymer type[J]. Environmental Pollution,2016, 215:331-339.
YIN K, WANG Y, ZHAO H J, et al. A comparative review of microplastics and nanoplastics:Toxicity hazards on digestive, reproductive and nervous system[J]. Science of the Total Environment, 2021, 774:145758.
WANG J, LI Y J, LU L, et al. Polystyrene microplastics cause tissue damages, sex-specific reproductive disruption and transgenerational effects in marine medaka(Oryzias melastigma)[J]. Environmental Pollution, 2019, 254:113024.
TENG J, ZHAO J M, ZHU X P, et al. Oxidative stress biomarkers, physiological responses and proteomic profiling in oyster(Crassostrea gigas) exposed to microplastics with irregular-shaped PE and PET microplastic[J]. Science of the Total Environment, 2021, 786:147425.
LIU Y X, WANG Y H, LI N, et al. Avobenzone and nanoplastics affect the development of zebrafish nervous system and retinal system and inhibit their locomotor behavior[J]. Science of the Total Environment, 2022, 806:150681.
HAN Z M, JIANG T F, XIE L, et al. Microplastics impact shell and pearl biomineralization of the pearl oyster Pinctada fucata[J]. Environmental Pollution, 2022, 293:118522.
WANG T, HU M H, XU G G, et al. Microplastic accumulation via trophic transfer:can a predatory crab counter the adverse effects of microplastics by body defence?[J].The Science of the Total Environment, 2021, 754:142099.
LEMOINE C M R, KELLEHER B M, LAGARDE R, et al.Transcriptional effects of polyethylene microplastics ingestion in developing zebrafish(Danio rerio)[J].Environmental Pollution, 2018, 243:591-600.
XIA B, SUI Q, DU Y S, et al. Secondary PVC microplastics are more toxic than primary PVC microplastics to Oryzias melastigma embryos[J]. Journal of Hazardous Materials,2022, 424:127421.
GONZÁLEZ-FERNÁNDEZ C, CUESTA A. Nanoplastics increase fish susceptibility to nodavirus infection and reduce antiviral immune responses[J]. International Journal of Molecular Sciences, 2022, 23(3):1483.
ZHAO Y, BAO Z W, WAN Z Q, et al. Polystyrene microplastic exposure disturbs hepatic glycolipid metabolism at the physiological, biochemical, and transcriptomic levels in adult zebrafish[J]. Science of the Total Environment,2020, 710:136279.
CHEN Q Q, GUNDLACH M, YANG S Y, et al. Quantitative investigation of the mechanisms of microplastics and nanoplastics toward zebrafish larvae locomotor activity[J].Science of the Total Environment, 2017, 584/585:1022-1031.
HOSEINI S M, KHOSRAVIANI K, HOSSEINPOUR DELAVAR F, et al. Hepatic transcriptomic and histopathological responses of common carp, Cyprinus carpio, to copper and microplastic exposure[J]. Marine Pollution Bulletin, 2022, 175:113401.
BANCHEREAU R, CEPIKA A M, BANCHEREAU J, et al.Understanding human autoimmunity and autoinflammation through transcriptomics[J]. Annual Review of Immunology,2017, 35:337-370.
SUSSARELLU R, SUQUET M, THOMAS Y, et al. Oyster reproduction is affected by exposure to polystyrene microplastics[J]. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113(9):2430-2435.
CAPOLUPO M, FRANZELLITTI S, VALBONESI P, et al.Uptake and transcriptional effects of polystyrene microplastics in larval stages of the Mediterranean mussel Mytilus galloprovincialis[J]. Environmental Pollution, 2018, 241:1038-1047.
AUGUSTE M, BALBI T, CIACCI C, et al. Shift in immune parameters after repeated exposure to nanoplastics in the marine bivalve Mytilus[J]. Frontiers in Immunology, 2020,11:426.
REVEL M, CHÂTEL A, PERREIN-ETTAJANI H, et al.Realistic environmental exposure to microplastics does not induce biological effects in the Pacific oyster Crassostrea gigas[J]. Marine Pollution Bulletin, 2020,150:110627.
XIAO Y, JIANG X F, LIAO Y C, et al. Adverse physiological and molecular level effects of polystyrene microplastics on freshwater microalgae[J]. Chemosphere, 2020, 255:126914.
ZHOU J Y, GAO L, LIN Y Y, et al. Micrometer scale polystyrene plastics of varying concentrations and particle sizes inhibit growth and upregulate microcystin-related gene expression in Microcystis aeruginosa[J]. Journal of Hazardous Materials, 2021, 420:126591.
HUANG W, SONG B, LIANG J, et al. Microplastics and associated contaminants in the aquatic environment:a review on their ecotoxicological effects, trophic transfer,and potential impacts to human health[J]. Journal of Hazardous Materials, 2021, 405:124187.
D'COSTA A H. Microplastics in decapod crustaceans:accumulation, toxicity and impacts, a review[J]. Science of the Total Environment, 2022, 832:154963.
YOO J W, CHO H, JEON M, et al. Effects of polystyrene in the brackish water flea Diaphanosoma celebensis:sizedependent acute toxicity, ingestion, egestion, and antioxidant response[J]. Aquatic Toxicology, 2021, 235:105821.
ZHANG W Y, LIU Z Q, TANG S K, et al. Transcriptional response provides insights into the effect of chronic polystyrene nanoplastic exposure on Daphnia pulex[J].Chemosphere, 2020, 238:124563.
LIU Z Q, YU P, CAI M Q, et al. Polystyrene nanoplastic exposure induces immobilization, reproduction, and stress defense in the freshwater cladoceran Daphnia pulex[J].Chemosphere, 2019, 215:74-81.
HAN J E, CHOI S K, JEON H J, et al. Transcriptional response in the whiteleg shrimp(Penaeus vannamei) to short-term microplastic exposure[J]. Aquaculture Reports,2021, 20:100713.
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